István Albert, Bioinformatics, Penn State
Publications
List of Publications
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Addendum: Transcriptomics and proteomics reveal two waves of translational repression during the maturation of malaria parasite sporozoitesNature communications, 2022
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Transcriptional Profiling of the Small Intestine and the Colon Reveals Modulation of Gut Infection with Citrobacter rodentium According to the Vitamin A StatusNutrients, 2022
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Paternal nicotine enhances fear memory, reduces nicotine administration, and alters hippocampal genetic and neural function in offspringAddiction biology, 2021
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RNAseq studies reveal distinct transcriptional response to vitamin A deficiency in small intestine versus colon, uncovering novel vitamin A-regulated genesThe Journal of nutritional biochemistry, 2021
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Complete Genome Sequence of Mycobacterium orygis Strain 51145Microbiology Resource Announcements, 2021
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Genomic characterization of velogenic avian orthoavulavirus 1 isolates from poultry workers: Implications to emergence and its zoonotic potential towards public healthAsian Pacific Journal of Tropical Medicine, 2021
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Effect of Adolescent Stress on Adult Morphine-Induced Behavioral Sensitization is Dependent Upon Genetic BackgroundbioRxiv, 2021
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Adolescent Stress Reduces Adult Morphine-Induced Behavioral Sensitization in C57BL/6J MiceFrontiers in behavioral neuroscience, 2021
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Genomic and Phenotypic Characterization of Chloracidobacterium Isolates Provides Evidence for Multiple SpeciesFrontiers in Microbiology, 2021
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Advantageous microbial community development and improved performance of pilot-scale field systems treating high-risk acid mine drainage with crab shellJournal of Hazardous Materials, 2021
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Metformin Affects the Transcriptomic Profile of Chicken Ovarian Cancer CellsGenes, 2021
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Elioraea tepida, sp. nov., a Moderately Thermophilic Aerobic Anoxygenic Phototrophic Bacterium Isolated from the Mat Community of an Alkaline Siliceous Hot Spring in Yellowstone National Park, WY, USAMicroorganisms, 2021
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A rapid and label-free platform for virus capture and identification from clinical samplesProceedings of the National Academy of Sciences, 2020
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Artificial selection finds new hypotheses for the mechanism of Wolbachia-Mediated dengue blocking in mosquitoesFrontiers in microbiology, 2020
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A rapid and label-free platform for virus capture and identification from clinical samplesProceedings of the National Academy of Sciences, 2020
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Bioinformatics recipes: creating, executing and distributing reproducible data analysis workflowsBMC bioinformatics, 2020
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Caldichromatium japonicum gen. nov., sp. nov., a novel thermophilic phototrophic purple sulphur bacterium of the Chromatiaceae isolated from Nakabusa hot springs, JapanInternational journal of systematic and evolutionary microbiology, 2020
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Comparative genomic analysis of the lettuce bacterial leaf spot pathogenPlant Health 2020 Online, 2020
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Transcriptome Analyses of Heart and Liver Reveal Novel Pathways for Regulating Songbird MigrationScientific reports, 2019
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Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitnessNature microbiology, 2019
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Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoesBioRxiv, 2019
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Paternal nicotine enhances fear memory, reduces nicotine administration, and alters hippocampal genetic and neural function in offspringAddiction biology, 2019
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USING EVOLUTIONARY APPROACHES TO DISSECT THE GENETIC BASIS OF WOLBACHIA-MEDIATED BLOCKING OF DENGUE VIRUS IN AEDES AEGYPTIAmerican Journal of Tropical Medicine and Hygiene, 2019
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Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitnessNature microbiology, 2019
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Puf3 participates in ribosomal biogenesis in malaria parasitesJ Cell Sci, 2018
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Whole-genome sequence of infectious pancreatic necrosis virus isolated from farmed brook trout (Salvelinus fontinalis) in PennsylvaniaGenome Announc., 2018
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Whole-genome sequences of 18 bovine alphaherpesvirus 1 field isolates from Pennsylvania and MinnesotaGenome Announc., 2018
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Complete genome sequences of three related avian avulavirus 1 isolates from poultry farmers in PakistanGenome Announc., 2018
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The influence of adolescent nicotine exposure on ethanol intake and brain gene expressionPloS one, 2018
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Whole-genome sequence analysis reveals unique SNP profiles to distinguish vaccine and wild-type strains of bovine herpesvirus-1 (BoHV-1)Virology, 2018
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Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage developmentNature communications, 2018
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In vivo genome-wide binding interactions of mouse and human constitutive androstane receptors reveal novel gene targetsNucleic acids research, 2018
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Whole-genome sequences of 18 bovine alphaherpesvirus 1 field isolates from Pennsylvania and Minnesota. Genome Announc 6: e00294-18, 2018
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Rapid magnetic isolation of extracellular vesicles via lipid-based nanoprobesNature biomedical engineering, 2017
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Gut microbiota increased by omega-3 fatty acids is negatively correlated with hepatic lipid metabolism-associated genes in mice with high carbohydrate diet-induced steatosisThe FASEB Journal, 2017
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Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera)Proceedings of the National Academy of Sciences, 2016
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NusA-dependent transcription termination prevents misregulation of global gene expressionNature microbiology, 2016
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Effects of spent mushroom compost (SMC) as an ingredient in phase I compost on production of Agaricus bisporusCompost Science & Utilization, 2016
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Bioinformatic analysis of microRNA networks following the activation of the constitutive androstane receptor (CAR) in mouse liverBiochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 2016
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Molecular tandem repeat strategy for elucidating mechanical properties of high-strength proteinsProceedings of the National Academy of Sciences, 2016
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Impact of helminth infections and nutritional constraints on the small intestine microbiotaPLoS One, 2016
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Tunable and label-free virus enrichment for ultrasensitive virus detection using carbon nanotube arraysScience advances, 2016
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RBM8a regulates neural progenitor proliferation.MOLECULAR BIOLOGY OF THE CELL, 2016
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Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera)2016 International Congress of Entomology, 2016
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Relating microbial community structure and geochemistry in deep regolith developed on volcaniclastic rock in the Luquillo Mountains, Puerto RicoGeomicrobiology Journal, 2015
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Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver diseaseThe Journal of clinical investigation, 2015
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Comparative analysis of super-shedder strains of Escherichia coli O157: H7 reveals distinctive genomic features and a strongly aggregative adherent phenotype on bovine rectoanal junction squamous epithelial cellsPloS one, 2015
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Persistent organic pollutants modify gut microbiota–host metabolic homeostasis in mice through aryl hydrocarbon receptor activationEnvironmental health perspectives, 2015
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Genomic characterization of a turkey reovirus field strain by Next-Generation SequencingInfection, Genetics and Evolution, 2015
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VirAmp: a galaxy-based viral genome assembly pipelineGigascience, 2015
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A critical role of RBM8a in proliferation and differentiation of embryonic neural progenitorsNeural development, 2015
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Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulationBMC genomics, 2015
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Dominant effects of the diet on the microbiome and the local and systemic immune response in micePloS one, 2014
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Regulating life or death: potential role of microRNA in rescue of the corpus luteumMolecular and cellular endocrinology, 2014
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Proteins: Materials Fabrication from Native and Recombinant Thermoplastic Squid Proteins (Adv. Funct. Mater. 47/2014)Advanced Functional Materials, 2014
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Materials fabrication from native and recombinant thermoplastic squid proteinsAdvanced Functional Materials, 2014
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Complete genome sequence and adherence characteristics of Escherichia coli O157: H7 isolated from super-shedder cattleF1000Research, 2014
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White button mushrooms increase microbial diversity and accelerate the resolution of Citrobacter rodentium infection in miceThe Journal of nutrition, 2013
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Microbiome remodelling leads to inhibition of intestinal farnesoid X receptor signalling and decreased obesityNature communications, 2013
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Spatial distribution of bacterial communities on volumetric and planar anodes in single‐chamber air‐cathode microbial fuel cellsBiotechnology and bioengineering, 2013
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BioStar: an online question & answer resource for the bioinformatics communityPLoS computational biology, 2011
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Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemiaPLoS computational biology, 2011
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Acknowledging contributions to online expert assistanceNature Precedings, 2011
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Disease dynamics in a dynamic social networkPhysica A: Statistical Mechanics and its Applications, 2010
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Attractor analysis of asynchronous Boolean models of signal transduction networksJournal of theoretical biology, 2010
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Personal recommendation algorithm inmultidimensional and weighted social network.Information Technology Journal, 2009
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Nucleosome organization in the Drosophila genomeNature, 2008
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A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genomeGenome research, 2008
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Boolean network simulations for life scientistsSource code for biology and medicine, 2008
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GeneTrack—a genomic data processing and visualization frameworkBioinformatics, 2008
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Translational and rotational settings of H2A. Z nucleosomes across the Saccharomycescerevisiae genomeNature, 2007
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A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendlyGenome research, 2007
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Nucleosome positions predicted through comparative genomicsNature genetics, 2006
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Rapid and asymmetric divergence of duplicate genes in the human gene coexpression networkBMC bioinformatics, 2006
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Galaxy: a platform for interactive large-scale genome analysisGenome research, 2005
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Galaxy: A platform for interactive large-scale genome analysisGenome Res, 2005
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Structural vulnerability of the North American power gridPhysical review E, 2004
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Conserved network motifs allow protein–protein interaction predictionBioinformatics, 2004
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HyBrow: a prototype system for computer-aided hypothesis evaluationBioinformatics, 2004
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Movielens unplugged: Experiences with a recommender system on four mobile devicesPeople and Computers XVII—Designing for Society, 2004
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MovieLens unplugged: experiences with an occasionally connected recommender systemProceedings of the 8th international conference on Intelligent user interfaces, 2003
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Is seeing believing? How recommender system interfaces affect users' opinionsProceedings of the SIGCHI conference on Human factors in computing systems, 2003
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Getting to know you: learning new user preferences in recommender systemsProceedings of the 7th international conference on Intelligent user interfaces, 2002
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On the recommending of citations for research papersProceedings of the 2002 ACM conference on Computer supported cooperative work, 2002
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A comprehensive analysis of protein-protein interactions in saccharomyces cerevisiae.Information Technology Journal, 2002
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Stick-slip fluctuations in granular dragPhysical Review E, 2001
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Granular drag on a discrete object: Shape effects on jammingPhysical review E, 2001
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Modeling relaxation and jamming in granular mediaPhysical review E, 2001
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The drag force in granular mediaPowders and grains 2001: proceedings of the fourth international conference on micromechanics of granular media, Sendai, Japan, 21–25 May 2001, 2001
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An Experimental Study of the Fluctuations in Granular DragMATERIALS RESEARCH SOCIETY SYMPOSIUM PROCEEDINGS, 2001
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Jamming and fluctuations in granular dragPhysical review letters, 2000
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An experimental study of the fluctuations in granular dragMRS Online Proceedings Library Archive, 2000
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What keeps sandcastles standing?Nature, 1997
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Maximum angle of stability in wet and dry spherical granular mediaPhysical Review E, 1997
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